miRBase entry: mmu-mir-669f

Stem-loop mmu-mir-669f


Accession
MI0006287
Symbol
MGI: Mir669f
Description
Mus musculus mmu-mir-669f precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
13 open access papers mention mmu-mir-669f
(25 sentences)

Sequence

2952 reads, 128 reads per million, 92 experiments
uguaugugccuguguguauAGUUGUGUGUGCAUGUGCAUGUGUguauaugaauauaCAUAUACAUACACACACACGUAUaaacgcaagcacaaacacacacagaggaauggcacucguuga
(((.(((((.(((((.((((..((((((((.(((((.((((((((......)))))))).))))).))))))))..)))).))))).))))).)))..((..(((........)))..)).

Structure
-------------------------   a     c     g    GU        C     C        au 
                         ugu ugugc ugugu uauA  UGUGUGUG AUGUG AUGUGUgu  a
                         ||| ||||| ||||| ||||  |||||||| ||||| ||||||||   
                         aca acacg acgca aUAU  ACACACAC UACAU UACauaua  u
aguugcucacgguaaggagacacac   a     a     a    GC        A     A        ag 


Annotation confidence High
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Genome context
chr2: 10467229-10467349 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from mmu-mir-669f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-669f-5p

Accession MIMAT0017327
Description Mus musculus mmu-miR-669f-5p mature miRNA
Sequence 20 - AGUUGUGUGUGCAUGUGCAUGUGU - 43
Evidence experimental
454 [2], Illumina [3]
Database links
Predicted targets

Mature mmu-miR-669f-3p

Accession MIMAT0005839
Description Mus musculus mmu-miR-669f-3p mature miRNA
Sequence 57 - CAUAUACAUACACACACACGUAU - 79
Evidence experimental
454 [1], Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 20668074
    Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
    "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
    "J Virol (2010) 84:10266-10275

  3. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102