Stem-loop cin-mir-7

Accession

MI0007155

Description

Ciona intestinalis cin-mir-7 precursor miRNA

Gene family

MIPF0000022; mir-7

Literature search

4 open access papers mention cin-mir-7
(11 sentences)

Sequence

239 reads, 106 reads per million, 2 experiments

auauccgcacccgguUGGAAGACUAGUGAUUUUGUUGuuauagcaaCAACAAUCUAUGGUCUCCUGCacggaagugga
...(((((..(((((.(((.(((((..(((((((((((....))))))).))))..)))))))).)).)))..)))))

Structure

aua     ac   -  U   A     GU    -       u 
   uccgc  ccg gu GGA GACUA  GAUU UUGUUGu a
   |||||  ||| || ||| |||||  |||| |||||||  
   aggug  ggc CG CCU CUGGU  CUAA AACaacg u
---     aa   a  U   -     AU    C       a 

Annotation confidence Not enough data

Genome context

1p: 1774516-1774593 [-]

Mature cin-miR-7-5p

• Accession: MIMAT0006091
• Description: Ciona intestinalis cin-miR-7-5p mature miRNA
• Sequence: 16 - UGGAAGACUAGUGAUUUUGUUG - 37
• Evidence: experimental ; Illumina [2]

Mature cin-miR-7-3p

• Accession: MIMAT0015251
• Description: Ciona intestinalis cin-miR-7-3p mature miRNA
• Sequence: 47 - CAACAAUCUAUGGUCUCCUGC - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39