Stem-loop cin-mir-92b

Accession

MI0007161

Description

Ciona intestinalis cin-mir-92b precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

1 open access papers mention cin-mir-92b
(1 sentences)

Sequence

1536 reads, 571 reads per million, 2 experiments

aaaaagcuccauuuucgcaguuuacuugcAGGUUUGGACCGGUGCACCAgauuauauaagauuucUAUUGCACUUGUCCCGGCCUUcaaauacugcugaac
.............((((((((....(((.(((((.((((.((((((..(((............)))..)))))).)))).))))).)))..))))).))).

Structure

aaaaagcuccauu   -     uuac   c     U    C      CC   uuaua 
             uuc gcagu    uug AGGUU GGAC GGUGCA  Aga     u
             ||| |||||    ||| ||||| |||| ||||||  |||      
             aag cguca    aac UCCGG CCUG UCACGU  Ucu     a
------------c   u     --ua   U     C    U      UA   uuaga 

Annotation confidence High

Genome context

1p: 2635676-2635776 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-92b

Mature cin-miR-92b-5p

• Accession: MIMAT0015254
• Description: Ciona intestinalis cin-miR-92b-5p mature miRNA
• Sequence: 30 - AGGUUUGGACCGGUGCACCA - 49
• Evidence: experimental ; Illumina [2]

Mature cin-miR-92b-3p

• Accession: MIMAT0006097
• Description: Ciona intestinalis cin-miR-92b-3p mature miRNA
• Sequence: 66 - UAUUGCACUUGUCCCGGCCUU - 86
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39