miRBase entry: cin-mir-184

Stem-loop cin-mir-184


Accession
MI0007173
Description
Ciona intestinalis cin-mir-184 precursor miRNA
Gene family
MIPF0000059; mir-184


Sequence

84 reads, 37 reads per million, 2 experiments
gcguaauagaacuugccacuucuucgcuuuccaucauuuugggguuaaaucacccaagccauugaUGGACGGAGAACUGAUAAGGGCucuugcguuggucaa
((((((.((..((((.((.(((((((...(((((((.((((((.........))))))....)))))))))))))).)).))))..)).)))))).......

Structure
-------      u  aa    c  c       cuu       ---u      guu 
       gcguaa ag  cuug ca uucuucg   uccauca    uuuggg   a
       |||||| ||  |||| || |||||||   |||||||    ||||||   a
       ugcguu uC  GAAU GU AAGAGGC   AGGUagu    gaaccc   a
aacuggu      c  GG    A  C       ---       uacc      acu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-184

Accession MIMAT0006108
Description Ciona intestinalis cin-miR-184 mature miRNA
Sequence 66 - UGGACGGAGAACUGAUAAGGGC - 87
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080

  2. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39