Stem-loop sequence osa-MIR1866

Accession

MI0008267 (change log)

Description

Oryza sativa miR1866 stem-loop

Literature search

1 open access papers mention osa-MIR1866
(1 sentences)

Stem-loop

   -      -c   g                     cg      g 
5'  cuuuug  acg agggauuuugcgggaauuuca  ggaauu a
    ||||||  ||| |||||||||||||||||||||  |||||| g
3'  ggaaac  ugu uucuuaaaauguccuuaaagu  ccuuag u
   a      cu   g                     --      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr3: 6510870-6510954 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008267

Mature sequence osa-miR1866-5p

• Accession: MIMAT0007817
• Previous IDs: osa-miR1866
• Sequence: 11 - gagggauuuugcgggaauuucacg - 34
• Evidence: experimental; 454 [1]

Mature sequence osa-miR1866-3p

• Accession: MIMAT0009212
• Sequence: 52 - ugaaauuccuguaaaauucuug - 73
• Evidence: experimental; Illumina [2]

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).
2. PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds" Xue LJ, Zhang JJ, Xue HW Nucleic Acids Res. 37:916-930(2009).