miRBase entry: osa-MIR1874

Stem-loop osa-MIR1874


Accession
MI0008277
Description
Oryza sativa osa-MIR1874 precursor miRNA

Literature search
8 open access papers mention osa-MIR1874
(39 sentences)

Sequence

2 reads, 3 reads per million, 1 experiments
ccauaaucaucuauuaguacaguggugaagacaUAGGGCUACUACACCAUCCAUAAGgguucgaaucuucgaugugccuagauaggguacaguuggaucccaUAUGGAUGGAGGUGUAACCCGAUGccuuuuacaaauagaugguuauuuu
..(((((((((((((.(((.......((((.(((.(((.(((.((.(((((((((.(((.((.(((......(((((((.....)))))))))).)).))).)))))))))..))))).))).))).))))))).)))))))))))))...

Structure
-cc             a   caguggu    a   A   C   U  -A         A   u  g   cuucga       a 
   auaaucaucuauu gua       gaag caU GGG UAC AC  CCAUCCAUA Ggg uc aau      ugugccu g
   ||||||||||||| |||       |||| ||| ||| ||| ||  ||||||||| ||| || |||      ||||||| a
   uauugguagauaa cau       uuuc GUA CCC AUG UG  GGUAGGUAU ccc ag uug      acauggg u
uuu             a   -------    c   G   A   -  GA         a   u  g   ------       a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr8: 8702798-8702948 [-]

Database links

Mature osa-miR1874-5p

Accession MIMAT0007827
Description Oryza sativa osa-miR1874-5p mature miRNA
Sequence 34 - UAGGGCUACUACACCAUCCAUAAG - 57
Evidence experimental
454 [1], Illumina [3]

Mature osa-miR1874-3p

Accession MIMAT0007828
Description Oryza sativa osa-miR1874-3p mature miRNA
Sequence 103 - UAUGGAUGGAGGUGUAACCCGAUG - 126
Evidence experimental
454 [1], cloned [2]
Database links

References

  1. PubMed ID: 19055717
    Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
    Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
    BMC Plant Biol (2008) 8:123

  2. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465

  3. PubMed ID: 19103661
    Characterization and expression profiles of miRNAs in rice seeds
    "Xue LJ, Zhang JJ, Xue HW"
    "Nucleic Acids Res (2009) 37:916-930