Stem-loop sequence aga-mir-1890

Accession

MI0008311 (change log)

Description

Anopheles gambiae miR-1890 stem-loop

Gene family

MIPF0000848; mir-1890

Literature search

2 open access papers mention aga-mir-1890
(5 sentences)

Stem-loop

         -    cg      g     ug   u     u    gaauauu 
5' gucgug ugga  gccaga cuaau  gag auuuc ugag       u
   |||||| ||||  |||||| |||||  ||| ||||| ||||        
3' cagcau gcuu  uggucu gauua  uuc uaaag acuc       u
         u    au      g     gu   -     u    gaacagu 

Confidence

Annotation confidence: not enough data

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Comments

This mature miRNA was cloned from Anopheles stepheni, and mapped to the A. gambiae genome [1].

Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr3R: 21181082-21181177 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008311

Mature sequence aga-miR-1890

• Accession: MIMAT0007861
• Sequence: 61 - ugaaaucuuugauuaggucu - 80
• Evidence: not experimental

References

1. PMID:18500992 "Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi" Mead EA, Tu Z BMC Genomics. 9:244(2008).