miRBase entry: bta-mir-1-2

Stem-loop bta-mir-1-2


Accession
MI0009718
Description
Bos taurus bta-mir-1-2 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
29 open access papers mention bta-mir-1-2
(133 sentences)

Sequence

15077 reads, 574 reads per million, 65 experiments
accuacucagaguacauacuucuuuauguacccauaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuugguaggc
.((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).)))))).

Structure
a      c                     ac     ug aca 
 ccuacu agaguacauacuucuuuaugu  ccaua  a   u
 |||||| |||||||||||||||||||||  |||||  |    
 ggaugg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
c      u                     -A     cg aac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr24: 34928847-34928931 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-1-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-1

Accession MIMAT0009214
Description Bos taurus bta-miR-1 mature miRNA
Sequence 53 - UGGAAUGUAAAGAAGUAUGUAU - 74
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125