Stem-loop bta-mir-129-2

Accession

MI0009729

Description

Bos taurus bta-mir-129-2 precursor miRNA

Literature search

13 open access papers mention bta-mir-129-2
(21 sentences)

Sequence

60126 reads, 76.0 reads per million, 294 experiments

cugcccuucgcgaauCUUUUUGCGGUCUGGGCUUGCUGuacauaacucaauagccggAAGCCCUUACCCCAAAAAGCAUUcgcggagggcgcac
.(((((((((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))))))))))...

Structure

--c              -       C   CU      ---     acau 
   ugcccuucgcgaau CUUUUUG GGU  GGGCUU   GCUGu    a
   |||||||||||||| ||||||| |||  ||||||   |||||     
   gcgggaggcgcUUA GAAAAAC CCA  CCCGAA   cgaua    a
cac              C       C   UU      ggc     acuc 

Annotation confidence High

Genome context

15: 73674100-73674193 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-129-2

Mature bta-miR-129-5p

• Accession: MIMAT0009221
• Description: Bos taurus bta-miR-129-5p mature miRNA
• Sequence: 16 - CUUUUUGCGGUCUGGGCUUGCUG - 38
• Evidence: experimental ; cloned [3]

Mature bta-miR-129-2-3p

• Accession: MIMAT0009220
• Description: Bos taurus bta-miR-129-2-3p mature miRNA
• Sequence: 58 - AAGCCCUUACCCCAAAAAGCAUU - 80
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125