miRBase entry: bta-mir-133b

Stem-loop bta-mir-133b


Accession
MI0009734
Description
Bos taurus bta-mir-133b precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
14 open access papers mention bta-mir-133b
(50 sentences)

Sequence

738 reads, 15 reads per million, 65 experiments
cccugcucuggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUAcagcagggcuggcaa
(((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).))))))).......

Structure
-------       c        ca  c  a      u  g    c 
       cccugcu uggcuggu  aa gg accaag cc ucuu  
       ||||||| ||||||||  || || |||||| || |||| c
       gggacga AUCGACCA  UU CC UGGUUU gg agag  
aacgguc       c        AC  C  C      -  -    u 


Annotation confidence Not enough data
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Genome context
chr23: 24357763-24357846 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-133b

Accession MIMAT0009226
Description Bos taurus bta-miR-133b mature miRNA
Sequence 48 - UUUGGUCCCCUUCAACCAGCUA - 69
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125