miRBase entry: bta-mir-206

Stem-loop bta-mir-206


Accession
MI0009772
Description
Bos taurus bta-mir-206 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
16 open access papers mention bta-mir-206
(93 sentences)

Sequence

657 reads, 65 reads per million, 5 experiments
ugcuucccaaggccacaugcuucuuuauauccccauacggauuacuuugcuaUGGAAUGUAAGGAAGUGUGUGGuuucggcgagcg
.((((.((.(((((((((((((((((((((..(((((((((....)))).))))).))))))))))))))))))))).)).)))).

Structure
u    c  a                     cc     -    u 
 gcuu cc aggccacaugcuucuuuauau  ccaua cgga u
 |||| || |||||||||||||||||||||  ||||| ||||  
 cgag gg uuuGGUGUGUGAAGGAAUGUA  GGUau guuu a
g    c  c                     -A     c    c 


Annotation confidence Not enough data
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Genome context
chr23: 24353667-24353752 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-206
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-206

Accession MIMAT0009260
Description Bos taurus bta-miR-206 mature miRNA
Sequence 53 - UGGAAUGUAAGGAAGUGUGUGG - 74
Evidence experimental
Array [3], qRT-PCR [3], cloned [4]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125