Stem-loop sequence bta-mir-219-1

AccessionMI0009781 (change log)
Previous IDsbta-mir-219
DescriptionBos taurus miR-219 stem-loop
Gene family MIPF0000044; mir-219
Literature search

6 open access papers mention bta-mir-219-1
(9 sentences)

Stem-loop 
   acuca       c     u   u     aa           uac a  c 
5'      ggagcuu gccac gau gucca  cgcaauucuug   g gu u
        ||||||| ||||| ||| |||||  |||||||||||   | || g
3'      ucucgag cggug cua caggu  guguuaagagc   c cg c
   ---gg       u     u   -     cg           caa -  g
Get sequence
Deep sequencing
73 reads, 0 reads per million, 38 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr11: 99257286-99257381 [-]
intergenic
Clustered miRNAs
< 10kb from bta-mir-219-1
bta-mir-219bchr11: 99257288-99257375 [+]
bta-mir-219-1chr11: 99257286-99257381 [-]
Database links

Mature sequence bta-miR-219-5p

Accession MIMAT0009269
Sequence

19 -  

ugauuguccaaacgcaauucuu

 - 40

Get sequence
Deep sequencing80 reads, 40 experiments
Evidence experimental;

Mature sequence bta-miR-219-3p

Accession MIMAT0012547
Sequence

62 -  

agaauuguggcuggacaucug

 - 82

Get sequence
Evidence experimental; cloned [3-4]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3
PMID:19267191 "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning" Long JE, Chen HX Biochem Genet. 47:329-343(2009).
4
PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).