miRBase entry: bta-mir-223

Stem-loop bta-mir-223


Accession
MI0009782
Description
Bos taurus bta-mir-223 precursor miRNA
Gene family
MIPF0000067; mir-223

Literature search
28 open access papers mention bta-mir-223
(96 sentences)

Sequence

4670 reads, 722 reads per million, 72 experiments
cccagccuccugcagugccaugcuccguguauuugacaagcugaguuggacacuccauguaguagUGUCAGUUUGUCAAAUACCCCAaguguggcauaugccuagcag
....((.....(((((((((((((..(.((((((((((((((((.....((((.....)).))....)))))))))))))))).)..)))))))))).)))...))..

Structure
ccca  cuccu   -          cc u                guugg  -  u 
    gc     gca gugccaugcu  g guauuugacaagcuga     ac ac c
    ||     ||| ||||||||||  | ||||||||||||||||     || || c
    cg     cgu uacgguguga  C CAUAAACUGUUUGACU     ug ug a
--ga  --auc   a          AC C                -GUga  a  u 


Annotation confidence High
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Genome context
chrX: 101046347-101046454 [-]

Database links

Mature bta-miR-223

Accession MIMAT0009270
Description Bos taurus bta-miR-223 mature miRNA
Sequence 66 - UGUCAGUUUGUCAAAUACCCCA - 87
Evidence experimental
Array [3], qRT-PCR [3], cloned [4]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125