Stem-loop sequence bta-mir-301b

AccessionMI0009790 (change log)
DescriptionBos taurus miR-301b stem-loop
Gene family MIPF0000034; mir-130
Literature search

2 open access papers mention bta-mir-301b
(3 sentences)

Stem-loop 
   -   --u     -  g a      c      ---g        acugu    u 
5'  ucc   gcugg cc c ggugcu ugacga    guugcacu     gcuu g
    |||   ||||| || | |||||| ||||||    ||||||||     ||||  
3'  agg   cgacc gg g cuacga acuguu    uaacguga     cgag a
   g   uuc     a  - c      a      auag        -----    g
Get sequence
Deep sequencing
2271 reads, 3.08 reads per million, 65 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr17: 74305850-74305944 [-]
intergenic
Clustered miRNAs
< 10kb from bta-mir-301b
bta-mir-301bchr17: 74305850-74305944 [-]
bta-mir-130bchr17: 74305539-74305620 [-]
Database links

Mature sequence bta-miR-301b

Accession MIMAT0009277
Sequence

53 -  

cagugcaaugauauugucaaagcau

 - 77

Get sequence
Deep sequencing2269 reads, 65 experiments
Evidence by similarity; MI0004122
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).