miRBase entry: bta-mir-338

Stem-loop bta-mir-338


Accession
MI0009805
Description
Bos taurus bta-mir-338 precursor miRNA
Gene family
MIPF0000097; mir-338

Literature search
5 open access papers mention bta-mir-338
(16 sentences)

Sequence

6632 reads, 105 reads per million, 69 experiments
gcacgggccguccuccccaacaauauccuggugcugagugaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUGAagagggcagcugcca
(((...((.((((((..((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..)))))).)))))..

Structure
--   cgg  c      cc      u   -         -   ga  a 
  gca   gc guccuc  caacaa auc cuggugcug agu  ug c
  |||   || ||||||  |||||| ||| ||||||||| |||  || a
  cgu   cg cgggag  GUUGUU UAG GACUACGAC Uca  gc c
ac   ---  a      aA      U   U         C   ac  a 


Annotation confidence Not enough data
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Genome context
chr19: 52407324-52407415 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-338
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-338

Accession MIMAT0009292
Description Bos taurus bta-miR-338 mature miRNA
Sequence 55 - UCCAGCAUCAGUGAUUUUGUUGA - 77
Evidence experimental
cloned [3-4]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125