Stem-loop sequence bta-mir-362

Accession

MI0009811 (change log)

Description

Bos taurus miR-362 stem-loop

Gene family

MIPF0000209; mir-362

Literature search

4 open access papers mention bta-mir-362
(5 sentences)

Stem-loop

   cuc           acc        -a ug     
5'    gaauccuugga   uaggugug  g  cugu 
      |||||||||||   ||||||||  |  ||| u
3'    cuuaggaacuu   auccacac  c  gauc 
   aaa           ---        aa gu     

Deep sequencing

938 reads, 20.3 reads per million, 74 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 93947354-93947418 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-362

• bta-mir-502a-2: chrX: 93942730-93942819 [+]
• bta-mir-502b: chrX: 93946864-93946946 [+]
• bta-mir-362: chrX: 93947354-93947418 [+]
• bta-mir-500: chrX: 93948610-93948693 [+]
• bta-mir-660: chrX: 93950762-93950841 [+]
• bta-mir-502a-1: chrX: 93952708-93952792 [+]

Database links

• EntrezGene:MIR362
• miRBase Tracker:MI0009811

Mature sequence bta-miR-362-5p

• Accession: MIMAT0009298
• Previous IDs: bta-miR-362
• Sequence: 5 - aauccuuggaaccuaggugugagu - 28
• Deep sequencing: 705 reads, 73 experiments
• Evidence: experimental; cloned [4]
• Predicted targets:
  • TargetScanVert:bta-miR-362-5p

Mature sequence bta-miR-362-3p

• Accession: MIMAT0012548
• Sequence: 42 - aacacaccuauucaaggauuc - 62
• Deep sequencing: 233 reads, 64 experiments
• Evidence: experimental; cloned [3-4]
• Predicted targets:
  • TargetScanVert:bta-miR-362-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19267191 "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning" Long JE, Chen HX Biochem Genet. 47:329-343(2009).
4. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).