miRBase entry: bta-mir-375

Stem-loop bta-mir-375


Accession
MI0009817
Description
Bos taurus bta-mir-375 precursor miRNA
Gene family
MIPF0000114; mir-375

Literature search
16 open access papers mention bta-mir-375
(22 sentences)

Sequence

151428 reads, 1613 reads per million, 75 experiments
ccccgcgacgagccccucgcacaaaccggaccugagcgUUUUGUUCGUUCGGCUCGCGUGAggc
.((((((.((((((...((.(((((.((........)).))))).))...)))))))))).)).

Structure
c  -    a      ccu  c     c  gac 
 cc cgcg cgagcc   cg acaaa cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
c  A    -      CUU  U     U  gag 


Annotation confidence Not enough data
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Genome context
chr2: 108046949-108047012 [-]

Database links

Mature bta-miR-375

Accession MIMAT0009303
Description Bos taurus bta-miR-375 mature miRNA
Sequence 39 - UUUUGUUCGUUCGGCUCGCGUGA - 61
Evidence experimental
Array [3], qRT-PCR [3], cloned [4]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125