miRBase entry: bta-mir-378-1

Stem-loop bta-mir-378-1


Accession
MI0009819
Description
Bos taurus bta-mir-378-1 precursor miRNA
Gene family
MIPF0000168; mir-378

Literature search
24 open access papers mention bta-mir-378-1
(101 sentences)

Sequence

535504 reads, 4644 reads per million, 77 experiments
agggcuccugacuccagguccuguguguuaccucgaaauagcACUGGACUUGGAGUCAGAAGGCcu
(((.((.((((((((((((((.((((..(........)..)))).)))))))))))))).)).)))

Structure
   g  c              u    gu acc 
agg cu cugacuccaggucc gugu  u   u
||| || |||||||||||||| ||||  |    
ucC GA GACUGAGGUUCAGG CAcg  a   c
   G  A              U    au aag 


Annotation confidence High
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Genome context
chr7: 63343197-63343262 [+]

Database links

Mature bta-miR-378

Accession MIMAT0009305
Description Bos taurus bta-miR-378 mature miRNA
Sequence 43 - ACUGGACUUGGAGUCAGAAGGC - 64
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125