Stem-loop bta-mir-411a

Accession

MI0009826

Description

Bos taurus bta-mir-411a precursor miRNA

Gene family

MIPF0000126; mir-379

Literature search

2 open access papers mention bta-mir-411a
(2 sentences)

Sequence

241263 reads, 2437 reads per million, 64 experiments

ugguacuuggagagAUAGUAGACCGUAUAGCGUACGcuuuaucugugacguauguaacacgguccacuaacccucaguauca
(((((((..(((.(.((((.((((((...((((((((.........).)))))))...)))))).)))).).))))))))))

Structure

       ug   a A    A      AUA       - uuu 
ugguacu  gag g UAGU GACCGU   GCGUACG c   a
|||||||  ||| | |||| ||||||   ||||||| |   u
acuauga  cuc c auca cuggca   uguaugc g   c
       --   c a    c      caa       a ugu 

Annotation confidence High

Genome context

chr21: 67841471-67841552 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from bta-mir-411a

Mature bta-miR-411a

• Accession: MIMAT0009312
• Description: Bos taurus bta-miR-411a mature miRNA
• Sequence: 15 - AUAGUAGACCGUAUAGCGUACG - 36
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125