miRBase entry: bta-mir-433

Stem-loop bta-mir-433


Accession
MI0009832
Description
Bos taurus bta-mir-433 precursor miRNA
Gene family
MIPF0000177; mir-433

Literature search
3 open access papers mention bta-mir-433
(92 sentences)

Sequence

195 reads, 10 reads per million, 49 experiments
uggccggggagaaguacggugagccugucauuguucagagaggcuagauccuccuuguugagaaggAUCAUGAUGGGCUCCUCGGUGUucuccagguagcggcaccacaccaugaaggcagccc
..(((..((((((...(((.(((((((((((...............((((((.(((...))).))))))))))))))))).)))...)))))).)))...(((.((..........))..))).

Structure
-------------------------ug   gg      gua   u           uguucagagaggcua      c   g 
                           gcc  ggagaa   cgg gagccugucau               gauccu cuu  
                           |||  ||||||   ||| |||||||||||               |||||| ||| u
                           ugg  ccucuU   GCU CUCGGGUAGUA               CUAgga gag  
cccgacggaaguaccacaccacggcga   -a      GUG   C           ---------------      a   u 


Annotation confidence Not enough data
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Genome context
chr21: 67707406-67707529 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-433
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-433

Accession MIMAT0009318
Description Bos taurus bta-miR-433 mature miRNA
Sequence 67 - AUCAUGAUGGGCUCCUCGGUGU - 88
Evidence experimental
cloned [2]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125