miRBase entry: bta-mir-451

Stem-loop bta-mir-451


Accession
MI0009837
Description
Bos taurus bta-mir-451 precursor miRNA
Gene family
MIPF0000148; mir-451

Literature search
18 open access papers mention bta-mir-451
(56 sentences)

Sequence

6910 reads, 80 reads per million, 65 experiments
cuugggguggcgaggAAACCGUUACCAUUACUGAGUUUaguaaugguaacgguucucuugcugcacccaga
.((((((((((((((.((((((((((((((((......)))))))))))))))).))))))))).))))).

Structure
c     -         A                GA 
 uuggg guggcgagg AACCGUUACCAUUACU  G
 ||||| ||||||||| ||||||||||||||||   
 gaccc cgucguucu uuggcaaugguaauga  U
a     a         c                UU 


Annotation confidence Not enough data
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Genome context
chr19: 20922863-20922933 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-451
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-451

Accession MIMAT0009323
Description Bos taurus bta-miR-451 mature miRNA
Sequence 16 - AAACCGUUACCAUUACUGAGUUU - 38
Evidence experimental
cloned [3-4]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125