miRBase entry: bta-mir-485

Stem-loop bta-mir-485


Accession
MI0009842
Description
Bos taurus bta-mir-485 precursor miRNA
Gene family
MIPF0000201; mir-485

Literature search
1 open access papers mention bta-mir-485
(1 sentences)

Sequence

367 reads, 12 reads per million, 54 experiments
acuugaagAGAGGCUGGCCGUGAUGAAUUCGauucaucaaagcgagucauacacggcucuccucucuuuuagu
(((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))

Structure
   u         CU       -    A    auuc 
acu gaagAGAGG  GGCCGUG AUGA UUCG    a
||| |||||||||  ||||||| |||| ||||    u
uga uuucucucc  ucggcac uacu gagc    c
   u         uc       a    -    gaaa 


Annotation confidence High
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Genome context
chr21: 67872328-67872400 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from bta-mir-485
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-485

Accession MIMAT0009328
Description Bos taurus bta-miR-485 mature miRNA
Sequence 9 - AGAGGCUGGCCGUGAUGAAUUCG - 31
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125