Stem-loop bta-mir-9-1

Accession

MI0009912

Description

Bos taurus bta-mir-9-1 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

18 open access papers mention bta-mir-9-1
(35 sentences)

Sequence

11436 reads, 179 reads per million, 66 experiments

ggaggcccguuucucUCUUUGGUUAUCUAGCUGUAUGagugccacagagccgucAUAAAGCUAGAUAACCGaaaguagaaaugacucuca
.((((..(((((((((.(((((((((((((((.(((((..((......))..))))).))))))))))))))))).)))))))..)))).

Structure

g    cc       -  C               G     gu  ca 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGa  gc  c
 ||||  ||||||| || ||||||||||||||| |||||  ||   
 cucu  guaaaga ga aaGCCAAUAGAUCGA AUAcu  cg  a
a    ca       u  -               A     gc  ag 

Annotation confidence High

Genome context

chr21: 21326580-21326669 [+]

Mature bta-miR-9-3p

• Accession: MIMAT0012549
• Description: Bos taurus bta-miR-9-3p mature miRNA
• Sequence: 55 - AUAAAGCUAGAUAACCG - 71
• Evidence: experimental ; cloned [4]

Mature bta-miR-9

• Accession: MIMAT0009389
• Description: Bos taurus bta-miR-9 mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUAUG - 37

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125