Stem-loop sme-mir-124e

Accession

MI0010779

Description

Schmidtea mediterranea sme-mir-124e precursor miRNA

Gene family

MIPF0000021; mir-124

Literature search

1 open access papers mention sme-mir-124e
(6 sentences)

Sequence

uucaauaaauuauucuacuGCCAUUCUCAGUUGGAGUCUUgauaugaucuauUAAGGCACGCUGUGAAUGCCAaggaauuuuauuucucuucu
...((((((..(((((..((.(((((.((((.(..(((((((((.....))))))))).))))).))))).)).)))))))))))........

Structure

-----uuc      uu     ac  C     U    U GA         u 
        aauaaa  auucu  uG CAUUC CAGU G  GUCUUgaua g
        ||||||  |||||  || ||||| |||| |  ||||||||| a
        uuauuu  uaagg  AC GUAAG GUCG C  CGGAAUuau u
ucuucucu      --     -a  C     U    - -A         c 

Annotation confidence Not enough data

Genome context

Contig2459: 516-608 [-]

Mature sme-miR-124e-5p

• Accession: MIMAT0012138
• Description: Schmidtea mediterranea sme-miR-124e-5p mature miRNA
• Sequence: 20 - GCCAUUCUCAGUUGGAGUCUU - 40
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-124e-3p

• Accession: MIMAT0011239
• Description: Schmidtea mediterranea sme-miR-124e-3p mature miRNA
• Sequence: 53 - UAAGGCACGCUGUGAAUGCCA - 73
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491