Stem-loop sme-mir-2154-1

Accession

MI0010784

Description

Schmidtea mediterranea sme-mir-2154-1 precursor miRNA

Gene family

MIPF0000781; mir-2154

Sequence

uucgagugauuauuagaauuUCAGCUGUACAAUUGGCAUUGUGUaugauaaaugaauauauuaacACAAGUCUUUGUAUAGCUUAUauuuuuuaucacuaauccacc
....((((((....(((((...((((((((((..(((.((((((.(((((........)))))))))))))).))))))))))...)))))..))))))........

Structure

----uucg      uauu     uUC          UU   A      a     aau 
        agugau    agaau   AGCUGUACAA  GGC UUGUGU ugaua   g
        ||||||    |||||   ||||||||||  ||| |||||| |||||    
        ucacua    uuuua   UCGAUAUGUU  CUG AACAca auuau   a
ccaccuaa      --uu     UAU          -U   -      -     aua 

Annotation confidence Not enough data

Genome context

Contig21503: 11131-11237 [+]

Mature sme-miR-2154-5p

• Accession: MIMAT0011244
• Description: Schmidtea mediterranea sme-miR-2154-5p mature miRNA
• Sequence: 21 - UCAGCUGUACAAUUGGCAUUGUGU - 44
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-2154-3p

• Accession: MIMAT0011412
• Description: Schmidtea mediterranea sme-miR-2154-3p mature miRNA
• Sequence: 66 - ACAAGUCUUUGUAUAGCUUAU - 86
• Evidence: experimental ; Illumina [1-2], 454 [2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491