Stem-loop sme-mir-2160-1

Accession

MI0010794

Description

Schmidtea mediterranea sme-mir-2160-1 precursor miRNA

Gene family

MIPF0000769; mir-2160

Literature search

1 open access papers mention sme-mir-2160-1
(3 sentences)

Sequence

aaaaucuuugugauuaaauaUGGCGCUUAUGUGUAGAACCGGuuguacuauauuuuuaaacuggUUUUUCAUGUAAGAGCCCAAAuaguaucacaaaaaucauc
......((((((((.......(((.((((((((.((((((((((..............)))))))))).)))))))).)))........)))))))).......

Structure

-aaaauc        -uaaauaU   G        U          guacua 
       uuugugau        GGC CUUAUGUG AGAACCGGuu      u
       ||||||||        ||| |||||||| ||||||||||       
       aaacacua        CCG GAAUGUAC UUUUggucaa      a
cuacuaa        ugauAAAC   A        U          auuuuu 

Annotation confidence Not enough data

Genome context

Contig12997: 19613-19716 [+]

Mature sme-miR-2160-5p

• Accession: MIMAT0011254
• Description: Schmidtea mediterranea sme-miR-2160-5p mature miRNA
• Sequence: 21 - UGGCGCUUAUGUGUAGAACCGG - 42
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-2160-1-3p

• Accession: MIMAT0011416
• Description: Schmidtea mediterranea sme-miR-2160-1-3p mature miRNA
• Sequence: 65 - UUUUUCAUGUAAGAGCCCAAA - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491