Stem-loop sme-mir-31b-3

Accession

MI0010954

Description

Schmidtea mediterranea sme-mir-31b-3 precursor miRNA

Gene family

MIPF0000064; mir-31

Literature search

1 open access papers mention sme-mir-31b-3
(1 sentences)

Sequence

caAGGCAAGAUGCUGGCAUAGCUGAuaaacuauuuauuaccAGCUAUUCAGGAUCUUUCCAUga
((.((.(((((.((((.(((((((.(((........))).))))))))))).))))).)).)).

Structure

-  A  C     G    C       A   acu 
 ca GG AAGAU CUGG AUAGCUG uaa   a
 || || ||||| |||| ||||||| |||    
 gU CC UUCUA GACU UAUCGAc auu   u
a  A  U     G    -       c   auu 

Annotation confidence Not enough data

Genome context

Contig27737: 5595-5658 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-31b-3

Mature sme-miR-31b-5p

• Accession: MIMAT0003980
• Description: Schmidtea mediterranea sme-miR-31b-5p mature miRNA
• Sequence: 3 - AGGCAAGAUGCUGGCAUAGCUGA - 25
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-31b-3p

• Accession: MIMAT0013779
• Description: Schmidtea mediterranea sme-miR-31b-3p mature miRNA
• Sequence: 42 - AGCUAUUCAGGAUCUUUCCAU - 62
• Evidence: experimental ; Illumina [1-2], 454 [2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491