Stem-loop dps-mir-980

Accession

MI0011594

Description

Drosophila pseudoobscura dps-mir-980 precursor miRNA

Gene family

MIPF0000890; mir-980

Sequence

gccacaaaagagaaacaaauugaaugugAGUCUCUCACAUGGCUGGUCUAGCugacuuguuucuaauauugcUAGCUGCCUUGUGAAGGGCUUacguguuuuuguagc
..............(((((....((((((((((.(((((.(((.((.(((((..................)))))))))).))))).))))))))))...)))))...

Structure

gccacaaaagagaa     uuga          C     U   U  U     ugacuugu 
              acaaa    augugAGUCU UCACA GGC GG CUAGC        u
              |||||    |||||||||| ||||| ||| || |||||         
              uguuu    ugcaUUCGGG AGUGU CCG UC GAUcg        u
-----------cga     -uug          A     U   -  -     uuauaauc 

Annotation confidence Not enough data

Genome context

XL_group1e: 4097649-4097756 [-]

Mature dps-miR-980-5p

• Accession: MIMAT0012223
• Description: Drosophila pseudoobscura dps-miR-980-5p mature miRNA
• Sequence: 29 - AGUCUCUCACAUGGCUGGUCUAGC - 52
• Evidence: experimental ; Illumina [1]

Mature dps-miR-980-3p

• Accession: MIMAT0012224
• Description: Drosophila pseudoobscura dps-miR-980-3p mature miRNA
• Sequence: 73 - UAGCUGCCUUGUGAAGGGCUU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9