miRBase entry: dps-mir-968

Stem-loop dps-mir-968

Accession

MI0011605

Description

Drosophila pseudoobscura dps-mir-968 precursor miRNA

Gene family

MIPF0000865; mir-968

Sequence

uaguucuacaauugcugcagcuuccuUAAGUAGUAUCCAUUAAGAGGUCGucaucuagcuaaaaucGACCUUUUGAUGUACUACUUUAAAaaagcacagucaaagucaacagaacug
(((((((((..((((((..((((..((((((((((..(((((((((((((...............))))))))))))))))))).))))..)))).))).))).))....)))))))

Structure

       ----  aa   -   ca    cc    -      UC             ucaucu 
uaguucu    ac  uug cug  gcuu  uUAA GUAGUA  CAUUAAGAGGUCG      a
|||||||    ||  ||| |||  ||||  |||| ||||||  |||||||||||||      g
gucaaga    ug  aac gac  cgaa  AAUU CAUCAU  GUAGUUUUCCAGc      c
       caac  -a   u   -a    aA    U      --             uaaaau

Annotation confidence Not enough data

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Genome context

4_group1: 1722779-1722895 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-968

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-968-5p

Accession	MIMAT0012245
Description	Drosophila pseudoobscura dps-miR-968-5p mature miRNA
Sequence	27 - UAAGUAGUAUCCAUUAAGAGGUCG - 50
Evidence	experimental Illumina [1]

Mature dps-miR-968-3p

Accession	MIMAT0012246
Description	Drosophila pseudoobscura dps-miR-968-3p mature miRNA
Sequence	67 - GACCUUUUGAUGUACUACUUUAAA - 90
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9