miRBase entry: dps-mir-964

Stem-loop dps-mir-964

Accession

MI0011610

Description

Drosophila pseudoobscura dps-mir-964 precursor miRNA

Sequence

gggauccccgugccaaauagagccaaaacuaucuuAGAUCGAAGGUUCCUGGCUUACagggauuugaugUAAGUUAAGAACCUCCGCUCUAagcuaguauggcuaucaucaacggccc
(((....((((.........(((((..((((.((((((.((.((((((.(((((((((.........))))))))).)))))).)).)))))).)))).))))).......)))))))

Structure

   aucc    gccaaauag     aa    u      U  A      C         ggg 
ggg    ccgu         agcca  acua cuuAGA CG AGGUUC UGGCUUACa   a
|||    ||||         |||||  |||| |||||| || |||||| |||||||||   u
ccc    ggca         ucggu  ugau gaAUCU GC UCCAAG AUUGAAUgu   u
   ----    --acuacua     -a    c      C  C      A         agu

Annotation confidence Not enough data

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Genome context

4_group4: 3181504-3181621 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dps-mir-964

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-964-5p

Accession	MIMAT0012255
Description	Drosophila pseudoobscura dps-miR-964-5p mature miRNA
Sequence	36 - AGAUCGAAGGUUCCUGGCUUAC - 57
Evidence	experimental Illumina [1]

Mature dps-miR-964-3p

Accession	MIMAT0012256
Description	Drosophila pseudoobscura dps-miR-964-3p mature miRNA
Sequence	70 - UAAGUUAAGAACCUCCGCUCUA - 91
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9