miRBase entry: dps-mir-2518-2

Stem-loop dps-mir-2518-2

Accession

MI0011644

Description

Drosophila pseudoobscura dps-mir-2518-2 precursor miRNA

Gene family

MIPF0000858; mir-2518

Sequence

gggcagccacacacacacacgaccguuucgaccccguugcgaaucgaacuugguuugaguUCGAGCAGCGGGUCGAUCCGAGCcauagccca
((((................(..((..(((((((.(((((...((((((((.....))))))))))))))))))))..))..)....)))).

Structure

-    agccacacacacacac ac  uu       c     gaa        g 
 gggc                g  cg  ucgaccc guugc   ucgaacuu g
 ||||                |  ||  ||||||| |||||   |||||||| u
 cccg                C  GC  AGCUGGG CGACG   AGCUugag u
a    ------------auac GA  CU       -     ---        u

Annotation confidence Not enough data

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Genome context

Unknown_group_82: 14041-14132 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-2518-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2518

Accession	MIMAT0012301
Description	Drosophila pseudoobscura dps-miR-2518 mature miRNA
Sequence	61 - UCGAGCAGCGGGUCGAUCCGAGC - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9