Stem-loop sequence dps-mir-2524

Accession

MI0011657 (change log)

Description

Drosophila pseudoobscura miR-2524 stem-loop

Stem-loop

   -      uauaguuu            gu  c   c   -   -     ga 
5'  gaguua        guaguuggcccg  uc cag aca ugu auguu  a
    ||||||        ||||||||||||  || ||| ||| ||| |||||   
3'  cucgau        uauuaaccgggc  ag guc ugu aua uauaa  u
   a      --------            uc  c   a   u   c     au 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (dpse_r2.26_FB2012_01)	Overlapping transcripts
XL_group1e: 8376659-8376751 [-]	intergenic
XL_group1e: 8377507-8377599 [-]	intergenic

Clustered miRNAs

< 10kb from dps-mir-2524

• dps-mir-2543b-1: XL_group1e: 8380575-8380690 [-]
• dps-mir-2517-3: XL_group1e: 8380430-8380532 [-]
• dps-mir-2544: XL_group1e: 8378925-8379029 [-]
• dps-mir-2542-3: XL_group1e: 8378579-8378663 [-]
• dps-mir-2543b-2: XL_group1e: 8378173-8378288 [-]
• dps-mir-2517-2: XL_group1e: 8378028-8378132 [-]
• dps-mir-2524: XL_group1e: 8377507-8377599 [-]
• dps-mir-2542-2: XL_group1e: 8376961-8377045 [-]
• dps-mir-2524: XL_group1e: 8376659-8376751 [-]
• dps-mir-2543a-2: XL_group1e: 8373978-8374093 [-]
• dps-mir-2542-1: XL_group1e: 8373614-8373698 [-]
• dps-mir-2541: XL_group1e: 8367679-8367786 [-]
• dps-mir-2540: XL_group1e: 8367333-8367441 [-]
• dps-mir-2523: XL_group1e: 8366995-8367108 [-]
• dps-mir-2539: XL_group1e: 8366678-8366788 [-]

Database links

• miRBase Tracker:MI0011657

Mature sequence dps-miR-2524

• Accession: MIMAT0012312
• Sequence: 60 - uauuguacugcgacucgggcca - 81
• Evidence: experimental; Illumina [1]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).