miRBase entry: dps-mir-2545b

Stem-loop dps-mir-2545b

Accession

MI0011660

Description

Drosophila pseudoobscura dps-mir-2545b precursor miRNA

Gene family

MIPF0000994; mir-2545

Sequence

uccuccucaaggaguaaauguucuacugcgcgagggcauagggcagauucucaauauucccugggcucugcuguccgaugccCUCACGCAGUACAAGAAUUUCcuccucgaggagga
((((((((.(((((.((((....(((((((.((((((((.((((((...((((........)))).....)))))).)))))))).))))))).....)))).))))).))))))))

Structure

        a     u    -guuc       c        a      --auu    aua 
uccuccuc aggag aaau     uacugcg gagggcau gggcag     cuca   u
|||||||| ||||| ||||     ||||||| |||||||| ||||||     ||||    
aggaggag uccuc UUUA     AUGACGC CUCccgua ccuguc     gggu   u
        c     C    AGAAC       A        g      gucuc    ccc

Annotation confidence Not enough data

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Genome context

XL_group1e: 1656606-1656722 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-2545b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2545b

Accession	MIMAT0012316
Description	Drosophila pseudoobscura dps-miR-2545b mature miRNA
Sequence	83 - CUCACGCAGUACAAGAAUUUC - 103
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9