Stem-loop sequence dps-mir-2536

Accession

MI0011670 (change log)

Description

Drosophila pseudoobscura miR-2536 stem-loop

Stem-loop

   -     -   u     a aacug   g  c  u     u   uu    c   u  gug 
5'  gugau uuc agaga g     gca ug aa acguu uuc  cgca uga gu   u
    ||||| ||| ||||| |     ||| || || ||||| |||  |||| ||| ||    
3'  cgcua gag ucuuu c     ugu ac uu ugcaa aag  gcgu acu ca   u
   c     c   -     g ----g   g  a  u     u   uu    a   c  aau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dpse_r2.26_FB2012_01): XL_group1e: 8362342-8362452 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-2536

• dps-mir-2541: XL_group1e: 8367679-8367786 [-]
• dps-mir-2540: XL_group1e: 8367333-8367441 [-]
• dps-mir-2523: XL_group1e: 8366995-8367108 [-]
• dps-mir-2539: XL_group1e: 8366678-8366788 [-]
• dps-mir-2522a: XL_group1e: 8365900-8366011 [-]
• dps-mir-2522b: XL_group1e: 8363413-8363514 [-]
• dps-mir-2538: XL_group1e: 8363244-8363359 [-]
• dps-mir-2521: XL_group1e: 8362756-8362842 [-]
• dps-mir-2520: XL_group1e: 8362599-8362718 [-]
• dps-mir-2537: XL_group1e: 8362508-8362587 [-]
• dps-mir-2536: XL_group1e: 8362342-8362452 [-]

Database links

• miRBase Tracker:MI0011670

Mature sequence dps-miR-2536-5p

• Accession: MIMAT0012326
• Previous IDs: dps-miR-2536
• Sequence: 29 - aauacguuuuucuucgcacuga - 50
• Evidence: experimental; Illumina [1]

Mature sequence dps-miR-2536-3p

• Accession: MIMAT0012327
• Previous IDs: dps-miR-2536*
• Sequence: 67 - aaugcguugaauaacguuuuac - 88
• Evidence: experimental; Illumina [1]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).