miRBase entry: dps-mir-2522b

Stem-loop dps-mir-2522b

Accession

MI0011673

Description

Drosophila pseudoobscura dps-mir-2522b precursor miRNA

Sequence

guguuuucuacgaucgaaguaauUUCCGGGAAUGCGCUGUUGUUGGuguauucgaaauuccAGAGCAGAGCAUUCUUCGUCAcuaccgccaucaacgagcau
((((((.....(((.(..(((....(.((((((((.(((((.((((.((.......)).))))))))).)))))))).)....)))..).)))...))))))

Structure

      ucuac   c aa   auUU C        G     G    u  au 
guguuu     gau g  gua    C GGGAAUGC CUGUU UUGG gu  u
||||||     ||| |  |||    | |||||||| ||||| |||| ||  c
uacgag     cua c  cau    G UUCUUACG GACGA GAcc ua  g
      --caa   c gc   cACU C        A     -    u  aa

Annotation confidence Not enough data

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Genome context

XL_group1e: 8363413-8363514 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from dps-mir-2522b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2522b-5p

Accession	MIMAT0012332
Description	Drosophila pseudoobscura dps-miR-2522b-5p mature miRNA
Sequence	24 - UUCCGGGAAUGCGCUGUUGUUGG - 46
Evidence	experimental Illumina [1]

Mature dps-miR-2522b-3p

Accession	MIMAT0012333
Description	Drosophila pseudoobscura dps-miR-2522b-3p mature miRNA
Sequence	62 - AGAGCAGAGCAUUCUUCGUCA - 82
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9