Stem-loop sequence dps-mir-2517-2

Accession

MI0011681 (change log)

Description

Drosophila pseudoobscura miR-2517-2 stem-loop

Gene family

MIPF0000839; mir-2517

Stem-loop

   -ccgggucaaauggucca              -      a c     uauuau 
5'                   gaguuuucagaucc ucaaau c auaug      u
                     |||||||||||||| |||||| | |||||       
3'                   uucaaaaguuuagg gguuua g uauac      u
   guucacaagaauucacuu              u      - u     uuucag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dpse_r2.26_FB2012_01): XL_group1e: 8378028-8378132 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-2517-2

• dps-mir-2543b-1: XL_group1e: 8380575-8380690 [-]
• dps-mir-2517-3: XL_group1e: 8380430-8380532 [-]
• dps-mir-2544: XL_group1e: 8378925-8379029 [-]
• dps-mir-2542-3: XL_group1e: 8378579-8378663 [-]
• dps-mir-2543b-2: XL_group1e: 8378173-8378288 [-]
• dps-mir-2517-2: XL_group1e: 8378028-8378132 [-]
• dps-mir-2524: XL_group1e: 8377507-8377599 [-]
• dps-mir-2542-2: XL_group1e: 8376961-8377045 [-]
• dps-mir-2524: XL_group1e: 8376659-8376751 [-]
• dps-mir-2543a-2: XL_group1e: 8373978-8374093 [-]
• dps-mir-2542-1: XL_group1e: 8373614-8373698 [-]

Database links

• miRBase Tracker:MI0011681

Mature sequence dps-miR-2517-3p

• Accession: MIMAT0012343
• Previous IDs: dps-miR-2517a
• Sequence: 62 - uauugauuugguggauuugaaaa - 84
• Evidence: experimental; Illumina [1]

Minor miR* sequence dps-miR-2517a*

• Accession: MIMAT0012342
• Sequence: 23 - uucagauccucaaauaccauaug - 45
• Evidence: experimental

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).