Stem-loop sequence bta-mir-19b-2

Accession

MI0012209 (change log)

Description

Bos taurus miR-19b-2 stem-loop

Gene family

MIPF0000011; mir-19

Literature search

3 open access papers mention bta-mir-19b-2
(11 sentences)

Stem-loop

   acugcuacu               -   -      uuu    -    g 
5'          uacaguuaguuuugc ugg uuugca   cagc gugu g
            ||||||||||||||| ||| ||||||   |||| ||||  
3'          guguuagucaaaacg acc aaacgu   gucg uaua a
   ---------               u   u      ---    g    u 

Deep sequencing

32728 reads, 387 reads per million, 76 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 18021338-18021420 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-19b-2

• bta-mir-106a: chrX: 18021857-18021937 [-]
• bta-mir-18b: chrX: 18021698-18021772 [-]
• bta-mir-20b: chrX: 18021463-18021531 [-]
• bta-mir-19b-2: chrX: 18021338-18021420 [-]
• bta-mir-92a-2: chrX: 18021187-18021254 [-]
• bta-mir-363: chrX: 18021032-18021105 [-]

Database links

• EntrezGene:MIR19B-2
• RNAcentral:URS000075D176_9913
• miRBase Tracker:MI0012209

Mature sequence bta-miR-19b

• Accession: MIMAT0004337
• Sequence: 56 - ugugcaaauccaugcaaaacuga - 78
• Deep sequencing: 65402 reads, 76 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • TargetScanVert:bta-miR-19b

References

1. PMID:19267191 "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning" Long JE, Chen HX Biochem Genet. 47:329-343(2009).
2. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).