miRBase entry: ssc-mir-133b

Stem-loop ssc-mir-133b


Accession
MI0013089
Description
Sus scrofa ssc-mir-133b precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
31 open access papers mention ssc-mir-133b
(155 sentences)

Sequence

7 reads, 20 reads per million, 4 experiments
ccugcucuggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUAUagcagggcugg
((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))).....

Structure
-----      c        ca  c  a      u  g    c 
     ccugcu uggcuggu  aa gg accaag cc ucuu  
     |||||| ||||||||  || || |||||| || |||| c
     ggacga AUCGACCA  UU CC UGGUUU gg agag  
ggucg      U        AC  C  C      -  -    u 


Annotation confidence Not enough data
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Genome context
chr7: 52430290-52430369 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-133b

Accession MIMAT0013869
Description Sus scrofa ssc-miR-133b mature miRNA
Sequence 47 - UUUGGUCCCCUUCAACCAGCUAU - 69
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328