miRBase entry: ssc-mir-499

Stem-loop ssc-mir-499


Accession
MI0013096
Description
Sus scrofa ssc-mir-499 precursor miRNA
Gene family
MIPF0000173; mir-499

Literature search
16 open access papers mention ssc-mir-499
(50 sentences)

Sequence

54 reads, 61 reads per million, 8 experiments
ugggcgggcggccgUUAAGACUUGCAGUGAUGUUUaacuccucuccacgugAACAUCACAGCAAGUCUGUGCUgcuuccc
.(((.(((((((.....((((((((.((((((((((.............)))))))))).))))))))..))))))))))

Structure
u   c       cgUUA        A          acucc 
 ggg gggcggc     AGACUUGC GUGAUGUUUa     u
 ||| |||||||     |||||||| ||||||||||     c
 ccc uucgUCG     UCUGAACG CACUACAAgu     u
-   -       ---UG        A          gcacc 


Annotation confidence Not enough data
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Genome context
chr17: 43571146-43571225 [+]

Database links

Mature ssc-miR-499-5p

Accession MIMAT0013877
Description Sus scrofa ssc-miR-499-5p mature miRNA
Sequence 15 - UUAAGACUUGCAGUGAUGUUU - 35
Evidence experimental
Illumina [1-4]

Mature ssc-miR-499-3p

Accession MIMAT0017373
Description Sus scrofa ssc-miR-499-3p mature miRNA
Sequence 52 - AACAUCACAGCAAGUCUGUGCU - 73
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100