miRBase entry: ssc-mir-143

Stem-loop ssc-mir-143


Accession
MI0013098
Description
Sus scrofa ssc-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143

Literature search
31 open access papers mention ssc-mir-143
(113 sentences)

Sequence

50217 reads, 12545 reads per million, 15 experiments
gucccccagccggaGGUGCAGUGCUGCAUCUCUGGucagcugggagucUGAGAUGAAGCACUGUAGCUCgggaagggaga
.((.(((..((.(((.(((((((((.((((((.((((......)).)).)))))).))))))))).))).))..))).))

Structure
g  c   ag  g   G         G      U  -  ag 
 uc ccc  cc gaG UGCAGUGCU CAUCUC GG uc  c
 || |||  || ||| ||||||||| |||||| || ||   
 ag ggg  gg CUC AUGUCACGA GUAGAG cu ag  u
-  a   aa  g   G         A      U  g  gg 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr2: 157344738-157344817 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-143-5p

Accession MIMAT0017374
Description Sus scrofa ssc-miR-143-5p mature miRNA
Sequence 15 - GGUGCAGUGCUGCAUCUCUGG - 35
Evidence experimental
Illumina [2,4-5]

Mature ssc-miR-143-3p

Accession MIMAT0013879
Description Sus scrofa ssc-miR-143-3p mature miRNA
Sequence 49 - UGAGAUGAAGCACUGUAGCUC - 69
Evidence experimental
Illumina [1-2,4-5], cloned [3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100