miRBase entry: ssc-mir-181d

Stem-loop ssc-mir-181d


Accession
MI0013108
Description
Sus scrofa ssc-mir-181d precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
26 open access papers mention ssc-mir-181d
(52 sentences)

Sequence

34 reads, 43 reads per million, 9 experiments
ucacaaucAACAUUCAUUGUUGUCGGUGGGUUgugagacggaggccagaCCCACCGAGGGAUGAAUGUCACuguggcugg
.((((....(((((((((....((((((((((.((.(.(....))))))))))))))..)))))))))...)))).....

Structure
----u    aucA         GUUG          g  a a g 
     caca    ACAUUCAUU    UCGGUGGGUU ug g c g
     ||||    |||||||||    |||||||||| || | |  
     gugu    UGUAAGUAG    AGCCACCCag ac c g a
ggucg    -CAC         --GG          -  - - g 


Annotation confidence Not enough data
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Genome context
chr2: 65553487-65553566 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-181d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-181d-5p

Accession MIMAT0013888
Description Sus scrofa ssc-miR-181d-5p mature miRNA
Sequence 9 - AACAUUCAUUGUUGUCGGUGGGUU - 32
Evidence experimental
Illumina [1-4]

Mature ssc-miR-181d-3p

Accession MIMAT0017375
Description Sus scrofa ssc-miR-181d-3p mature miRNA
Sequence 50 - CCCACCGAGGGAUGAAUGUCAC - 71
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100