miRBase entry: ssc-mir-92b

Stem-loop ssc-mir-92b


Accession
MI0013126
Description
Sus scrofa ssc-mir-92b precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
11 open access papers mention ssc-mir-92b
(25 sentences)

Sequence

6 reads, 14 reads per million, 4 experiments
gcgggcgggAGGGACGGGACGCGGUGCAGUGUUguucuuuccccugccaaUAUUGCACUCGUCCCGGCCUCCggcccccc
..((((.(((((..(((((((.((((((((((((..(........).))))))))))))))))))).))))).))))...

Structure
-gc    g     GA       C            uu uuu 
   gggc ggAGG  CGGGACG GGUGCAGUGUUg  c   c
   |||| |||||  ||||||| ||||||||||||  |    
   cccg CCUCC  GCCCUGC UCACGUUAUaac  g   c
ccc    g     -G       -            -c ucc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 103407102-103407181 [-]

Database links

Mature ssc-miR-92b-5p

Accession MIMAT0017377
Description Sus scrofa ssc-miR-92b-5p mature miRNA
Sequence 10 - AGGGACGGGACGCGGUGCAGUGUU - 33
Evidence experimental
Illumina [2-4]

Mature ssc-miR-92b-3p

Accession MIMAT0013909
Description Sus scrofa ssc-miR-92b-3p mature miRNA
Sequence 51 - UAUUGCACUCGUCCCGGCCUCC - 72
Evidence experimental
Illumina [1-4]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100