miRBase entry: ssc-mir-374a

Stem-loop ssc-mir-374a


Accession
MI0013130
Description
Sus scrofa ssc-mir-374a precursor miRNA
Gene family
MIPF0000288; mir-374

Literature search
5 open access papers mention ssc-mir-374a
(8 sentences)

Sequence

839 reads, 353 reads per million, 11 experiments
caucggccaUUAUAAUACAACCUGAUAAGUGuuacagcaCUUAUCAGGUUGUAUUGUAAUUgucuguguauauauaugcc
(((.(((.((((((((((((((((((((((((....)))))))))))))))))))))))).))).)))............

Structure
------------   c   c                        u 
            cau ggc aUUAUAAUACAACCUGAUAAGUGu a
            ||| ||| ||||||||||||||||||||||||  
            gug cug UAAUGUUAUGUUGGACUAUUCacg c
ccguauauauau   u   U                        a 


Annotation confidence High
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Genome context
chrX: 67530361-67530440 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-374a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-374a-5p

Accession MIMAT0013913
Description Sus scrofa ssc-miR-374a-5p mature miRNA
Sequence 10 - UUAUAAUACAACCUGAUAAGUG - 31
Evidence experimental
Illumina [1-4]

Mature ssc-miR-374a-3p

Accession MIMAT0013914
Description Sus scrofa ssc-miR-374a-3p mature miRNA
Sequence 40 - CUUAUCAGGUUGUAUUGUAAUU - 61
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100