miRBase entry: ssc-mir-196b-1

Stem-loop ssc-mir-196b-1


Accession
MI0013137
Description
Sus scrofa ssc-mir-196b-1 precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
13 open access papers mention ssc-mir-196b-1
(35 sentences)

Sequence

1 reads, 6 reads per million, 1 experiments
cuggucggugauuUAGGUAGUUUCCUGUUGUUGGGauccaccuuucucuCGACAGCACGACACUGCCUUCAuuacuucag
((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..))))))))))

Structure
    uc      uU       U  C           ucca 
cugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
||||  ||||||  ||||||| || |||||||||||     
gacu  ucauuA  UCCGUCA AG ACGACAGCucu    c
    --      CU       C  C           cuuu 


Annotation confidence Not enough data
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Genome context
chr18: 49836543-49836622 [+]

Database links

Mature ssc-miR-196b-5p

Accession MIMAT0013923
Description Sus scrofa ssc-miR-196b-5p mature miRNA
Sequence 14 - UAGGUAGUUUCCUGUUGUUGGG - 35
Evidence experimental
Illumina [1]

Mature ssc-miR-196b-3p

Accession MIMAT0017379
Description Sus scrofa ssc-miR-196b-3p mature miRNA
Sequence 50 - CGACAGCACGACACUGCCUUCA - 71
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100