miRBase entry: ssc-mir-339-1

Stem-loop ssc-mir-339-1


Accession
MI0013149
Description
Sus scrofa ssc-mir-339-1 precursor miRNA
Gene family
MIPF0000193; mir-339

Literature search
7 open access papers mention ssc-mir-339-1
(7 sentences)

Sequence

355 reads, 158 reads per million, 11 experiments
gcagccgccgUCCCUGUCCUCCAGGAGCUCACuuaccuugggccgugAGCUCCUCGAGGCCAGAGCCCgugucugccucu
((((.(((.(.(.(((.((((.((((((((((...((...))..)))))))))).)))).))).).).))).))))....

Structure
----    c   c U C   U    C          uua  u 
    gcag cgc g C CUG CCUC AGGAGCUCAC   cc  
    |||| ||| | | ||| |||| ||||||||||   || u
    cguc gug C G GAC GGAG UCCUCGAgug   gg  
ucuc    u   C C A   C    C          -cc  g 


Annotation confidence Not enough data
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Genome context
chr3: 726710-726789 [+]

Database links

Mature ssc-miR-339-5p

Accession MIMAT0013939
Description Sus scrofa ssc-miR-339-5p mature miRNA
Sequence 11 - UCCCUGUCCUCCAGGAGCUCAC - 32
Evidence experimental
Illumina [1,3-5], cloned [2]

Mature ssc-miR-339-3p

Accession MIMAT0017381
Description Sus scrofa ssc-miR-339-3p mature miRNA
Sequence 48 - AGCUCCUCGAGGCCAGAGCCC - 68
Evidence experimental
Illumina [3-5]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100