miRBase entry: ssc-mir-708

Stem-loop ssc-mir-708


Accession
MI0013154
Description
Sus scrofa ssc-mir-708 precursor miRNA
Gene family
MIPF0000397; mir-708

Literature search
6 open access papers mention ssc-mir-708
(17 sentences)

Sequence

409 reads, 212 reads per million, 14 experiments
cccucAAGGAGCUUACAAUCUAGCUGGGggugaaugacuugcacaugaacgCAACUAGACUGUGAGCUUCUAGAgggcag
(((((.(((((((((((.(((((....(.((..(((.......)))..)).)..))))).))))))))))).)))))...

Structure
---     A           A     CUGG g  ga   ac 
   cccuc AGGAGCUUACA UCUAG    G gu  aug  u
   ||||| ||||||||||| |||||    | ||  |||  u
   gggAG UCUUCGAGUGU AGAUC    C ca  uac  g
gac     A           C     --AA g  ag   ac 


Annotation confidence High
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Genome context
chr9: 15120477-15120556 [-]

Database links

Mature ssc-miR-708-5p

Accession MIMAT0013945
Description Sus scrofa ssc-miR-708-5p mature miRNA
Sequence 6 - AAGGAGCUUACAAUCUAGCUGGG - 28
Evidence experimental
Illumina [1-3]

Mature ssc-miR-708-3p

Accession MIMAT0017383
Description Sus scrofa ssc-miR-708-3p mature miRNA
Sequence 52 - CAACUAGACUGUGAGCUUCUAGA - 74
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328