miRBase entry: ssc-mir-432

Stem-loop ssc-mir-432


Accession
MI0013155
Description
Sus scrofa ssc-mir-432 precursor miRNA
Gene family
MIPF0000211; mir-432

Literature search
6 open access papers mention ssc-mir-432
(11 sentences)

Sequence

uccaggUCUUGGAGUAGGUCAUUGGGUggauccuuuauuucccuaugugggccacUGGAUGGCUCCUCCAUGGCUuggag
((((((((.(((((..(((((((.(((((.(((..(((......))).)))))))).))))))).))))).)))))))).

Structure
-        U     UA       G     a   uu   uu 
 uccaggUC UGGAG  GGUCAUU GGUgg ucc  uau  c
 |||||||| |||||  ||||||| ||||| |||  |||   
 agguUCGG ACCUC  UCGGUAG Ucacc ggg  gua  c
g        U     -C       G     -   -u   uc 


Annotation confidence Not enough data
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Genome context
chr7: 132079003-132079082 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-432
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-432-5p

Accession MIMAT0013946
Description Sus scrofa ssc-miR-432-5p mature miRNA
Sequence 7 - UCUUGGAGUAGGUCAUUGGGU - 27
Evidence experimental
Illumina [1-3]

Mature ssc-miR-432-3p

Accession MIMAT0017384
Description Sus scrofa ssc-miR-432-3p mature miRNA
Sequence 56 - UGGAUGGCUCCUCCAUGGCU - 75
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328