miRBase entry: ssc-mir-1839

Stem-loop ssc-mir-1839


Accession
MI0013162
Description
Sus scrofa ssc-mir-1839 precursor miRNA
Gene family
MIPF0000702; mir-1839

Literature search
1 open access papers mention ssc-mir-1839
(6 sentences)

Sequence

1 reads, 4 reads per million, 1 experiments
ccuaaaugaaAAGGUAGAUAGAACAGGUCUUGuuugcaagaugaauucaAGACCUACUUUUCUACCAACAgcaauuacac
............((((((.(((..((((((((....((...))....))))))))..)))))))))..............

Structure
--ccuaaaugaaAA      U   AC        uuug  a 
              GGUAGA AGA  AGGUCUUG    ca  
              |||||| |||  ||||||||    || g
              CCAUCU UUU  UCCAGAac    gu  
cacauuaacgACAA      -   CA        uuaa  a 


Annotation confidence Not enough data
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Genome context
chr7: 57683204-57683283 [-]

Database links

Mature ssc-miR-1839-5p

Accession MIMAT0013952
Description Sus scrofa ssc-miR-1839-5p mature miRNA
Sequence 11 - AAGGUAGAUAGAACAGGUCUUG - 32
Evidence experimental
Illumina [1-4]

Mature ssc-miR-1839-3p

Accession MIMAT0017385
Description Sus scrofa ssc-miR-1839-3p mature miRNA
Sequence 50 - AGACCUACUUUUCUACCAACA - 70
Evidence experimental
Illumina [2-4]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100