miRBase entry: zma-MIR395k

Stem-loop zma-MIR395k


Accession
MI0013219
Description
Zea mays zma-MIR395k precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
18 open access papers mention zma-MIR395k
(85 sentences)

Sequence

aGUUUCCUUCAAGCACUUCACAUggagcauucugucuuagagaaagcuuaauuuauugcauuGUGAAGUGUUUGAGGAAACUCu
((((((((.(((((((((((((((((((.((((.......)))).)))).........)).)))))))))))))))))))))..

Structure
--        U             -  ---------    a    gu 
  aGUUUCCU CAAGCACUUCACA Ug         gagc uucu  c
  |||||||| ||||||||||||| ||         |||| ||||  u
  UCAAAGGA GUUUGUGAAGUGu ac         uucg aaga  u
uC        -             u  guuauuuaa    a    ga 


Annotation confidence Not enough data
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Genome context
chr10: 78600241-78600324 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from zma-MIR395k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR395k-5p

Accession MIMAT0015343
Description Zea mays zma-miR395k-5p mature miRNA
Sequence 2 - GUUUCCUUCAAGCACUUCACAU - 23
Evidence not_experimental

Mature zma-miR395k-3p

Accession MIMAT0014008
Description Zea mays zma-miR395k-3p mature miRNA
Sequence 63 - GUGAAGUGUUUGAGGAAACUC - 83
Evidence not_experimental

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716