Stem-loop sequence aae-mir-998

AccessionMI0013444 (change log)
DescriptionAedes aegypti miR-998 stem-loop
Gene family MIPF0000952; mir-998
Literature search

2 open access papers mention aae-mir-998
(4 sentences)

Stem-loop 
   aa           c  a     c        gu      ----    u 
5'   gaaccaauacc ga cugaa ucucgugg  cugcag    uuga a
     ||||||||||| || ||||| ||||||||  ||||||    ||||  
3'   cuugguugugg cu gacuu agaguacc  gauguu    agcu u
   -g           c  c     -        ac      cgaa    u
Get sequence
Deep sequencing
13813 reads, 650 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
Coordinates (AaegL1) Overlapping transcripts
supercont1.744: 322280-322371 [+]
intergenic
Clustered miRNAs
< 10kb from aae-mir-998
aae-mir-11supercont1.744: 321996-322109 [+]
aae-mir-998supercont1.744: 322280-322371 [+]
Database links

Mature sequence aae-miR-998

Accession MIMAT0014227
Sequence

59 -  

uagcaccaugagauucagc

 - 77

Get sequence
Deep sequencing6534 reads, 2 experiments
Evidence experimental; 454 [1], Illumina [2]

References

1
PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).
2
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).